Package index • divent

Package summary
`divent` `divent-package`	divent
Datasets
`paracou_6_abd` `paracou_6_wmppp`	Paracou plot 6
`paracou_6_fundist`	Functional distances between Paracou plot 6 species
`paracou_6_taxo`	Taxonomy of Paracou plot 6 species
`mock_3sp_abd` `mock_3sp_dist` `mock_3sp_tree`	Mock data
Generate data
`rcommunity()`	Random communities
`rlseries()`	Log-Series Distribution
Diversity
`div_hill()`	Hill number of a Community
`div_hurlbert()`	Hurlbert Diversity of a Community
`div_part()`	Diversity partition
`div_phylo()`	Phylogenetic Diversity of a Community
`div_richness()`	Number of Species of a Community
`div_similarity()`	Similarity-Based Diversity of a Community
Entropy
`ent_hurlbert()`	Hurlbert Entropy of a Community
`ent_phylo()`	Phylogenetic Entropy of a Community
`ent_rao()`	Rao's Quadratic Entropy of a Community
`ent_shannon()`	Shannon's Entropy of a Community
`ent_similarity()`	Similarity-Based Entropy of a Community
`ent_simpson()`	Simpson's Entropy of a Community
`ent_tsallis()`	Tsallis Entropy of a Community
Diversity accumulations
`accum_ent_phylo()` `accum_div_phylo()`	Phylogenetic Diversity Accumulation of a Community
`accum_tsallis()` `accum_hill()`	Diversity Accumulation of a Community
Diversity profiles
`profile_hill()`	Diversity Profile of a Community
`profile_phylo()`	Phylogenetic Diversity Profile of a Community
`profile_similarity()`	Similarity-Based Diversity Profile of a Community
Functional features
`fun_ordinariness()`	Functional ordinariness of a community
`fun_similarity()`	Functional similarity
Plots
`autoplot(<accumulation>)`	Plot Accumulation Objects
`autoplot(<profile>)`	Plot Profile Objects
`plot(<species_distribution>)` `autoplot(<species_distribution>)`	Plot Profile Objects
`plot(<phylo_divent>)`	Plot phylo_divent Objects
Statistics from species distributions
`abd_freq_count()`	Abundance Frequency Count of a Community
`abd_species()` `abd_sum()` `prob_species()`	Abundances of Communities
`coverage()` `coverage_to_size()`	Sample Coverage of a Community
`fit_rac()`	Fit a distribution
Classes
`species_distribution()` `as_species_distribution()` `is_species_distribution()` `as_probabilities()` `is_probabilities()` `abundances()` `as_abundances()` `is_abundances()` `as.matrix(<species_distribution>)` `as.double(<species_distribution>)` `as.numeric(<species_distribution>)`	Species Distributions
`probabilities()`	Probabilities of Species
`as_phylo_divent()` `is_phylo_divent()`	Class phylo_divent
Utilities
`exp_q()`	Deformed exponential
`ln_q()`	Deformed logarithm
`e_n_q()`	Grassberger's expectation of n^q
`metacommunity()`	Aggregate communities into a metacommunity

Reference

Package summary

Datasets

Generate data

Diversity

Entropy

Diversity accumulations

Diversity profiles

Functional features

Plots

Statistics from species distributions

Classes

Utilities