Package summary

SpatDiv

SpatDiv

Data

Paracou6

Paracou plot 6

rSpCommunity()

Random Spatialized Community

Simulation of spatialized communities

rSpSpecies()

Random Spatialized Distribution of a Species

rSpCommunity()

Random Spatialized Community

Diversity Accumulation

DivAccum()

Diversity Accumulation

EntAccum()

Entropy Accumulation

Mixing()

Mixing index

MapPlot()

MapPlot

autoplot(<Accumulation>)

Plot Diversity Accumulation

plot(<Accumulation>)

Plot Diversity Accumulation

Maps

MapPlot()

MapPlot

Entropy and Diversity

Methods to calculate diversity extending package entropart.

Tsallis(<character>)

Tsallis (HCDT) Entropy of a vector of individuals

Tsallis(<factor>)

Tsallis (HCDT) Entropy of a vector of individuals

Tsallis(<wmppp>)

Tsallis (HCDT) Entropy of a spatialized community

Diversity(<character>)

HCDT diversity of a vector of individuals

Diversity(<factor>)

HCDT diversity of a vector of individuals

Diversity(<wmppp>)

HCDT diversity of a spatialized community

Richness(<character>)

Richness of a vector of individuals

Richness(<factor>)

Richness of a vector of individuals

Richness(<wmppp>)

Richness of a spatialized community

Shannon(<character>)

Shannon Entropy of a vector of individuals

Shannon(<factor>)

Shannon Entropy of a vector of individuals

Shannon(<wmppp>)

Shannon Entropy of a spatialized community

Simpson(<character>)

Simpson Entropy of a vector of individuals

Simpson(<factor>)

Simpson Entropy of a vector of individuals

Simpson(<wmppp>)

Simpson Entropy of a spatialized community

Simpson_r() Simpson_rEnvelope()

Spatially Explicit Simpson's Entropy

Species Distributions

Utilities to build SpeciesDistributions objects extending package entropart.

as.SpeciesDistribution(<wmppp>) as.SpeciesDistribution(<factor>) as.SpeciesDistribution(<character>) as.ProbaVector(<wmppp>) as.ProbaVector(<factor>) as.ProbaVector(<character>) as.AbdVector(<wmppp>) as.AbdVector(<factor>) as.AbdVector(<character>)

Species Distribution

Utilities

alphahull()

alpha-shape calculation

parallelCountNbd()

parallelCountNbd