Plot Diversity Accumulation

# S3 method for Accumulation
autoplot(
  object,
  ...,
  q = dimnames(object$Accumulation)$q[1],
  main = "Accumulation of ...",
  xlab = "Sample size...",
  ylab = "Diversity...",
  ylim = NULL,
  lineH0 = TRUE,
  ShadeColor = "grey75",
  BorderColor = "red"
)

Arguments

object: An "Accumulation" object that cat be accumulation of diversity (DivAccum), entropy (EntAccum) or the Mixing index (Mixing).
...: Further plotting arguments.
q: The order of Diversity. By default, the first value found in the "Accumulation" object is used.
main: Main title of the plot.
xlab: X-axis label.
ylab: Y-axis label.
ylim: Limits of the Y-axis, as a vector of two numeric values.
lineH0: if TRUE, the values of the null hypothesis are plotted.
ShadeColor: The color of the shaded confidence envelope.
BorderColor: The color of the borders of the confidence envelope.

Examples

# Generate a random community
spCommunity <- rSpCommunity(1, size=50, S=3)
# Calculate mixing indices of order 0 and 1
accum <- Mixing(spCommunity, q.seq=c(0,1))
#> 
#> 
autoplot(accum, q=0)